Library preparation

Libraries built for discovery, not just sequencing.

  • Expertise across diverse inputs — from pristine RNA to degraded FFPE
  • Proven Illumina-compatible chemistries and validated workflows
  • Integrated QC at every stage (BioAnalyzer, TapeStation, Qubit)
  • Seamless transition to GTAC@MGI sequencing and analysis pipelines
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Technology overview

Library preparation converts DNA or RNA molecules into sequencing-ready fragments that preserve biological complexity and ensure accurate representation across the genome or transcriptome. During this process, nucleic acids are fragmented, repaired, and ligated to indexed adapters that enable both amplification and sample multiplexing. The choice of chemistry—whether PCR-free for variant accuracy, ribosomal-depleted for transcriptome breadth, or bisulfite/enzymatic conversion for methylation profiling—directly influences the quality and interpretability of downstream data. GTAC@MGI tailors each library preparation to sample type, input quantity, and study goals, applying rigorous QC to minimize bias and maximize discovery potential across Illumina sequencing platforms.

RNA-seq library prep

Choose the best workflow for your RNA quality, quantity, and biological question. Each prep is optimized for expression accuracy and transcript coverage.

  • PolyA selection for mRNA enrichment
  • Ribosomal depletion: KAPA RiboErase or Qiagen FastSelect (H/M/R)
  • Globin + rRNA depletion: Qiagen FastSelect or Watchmaker (H/M/R+Globin)
  • Low-input options: Takara SMART-seq, Sigma SeqPlex
  • Support for cDNA or mRNA submissions

DNA-seq library prep

Prepare high-quality DNA libraries for genome, exome, methylation, or targeted sequencing projects.

  • Whole Genome: KAPA Hyper PCR-Free / amplified / low-input IDT cfDNA
  • Methylation: IDT Methyl-seq (bisulfite) or NEB EM-seq (enzymatic)
  • Whole Exome: KAPA Hyper + IDT Exome capture
  • Custom Capture: KAPA Hyper + custom probe panels
  • ChIP-seq and Amplicon-seq supported

QC & validation

Comprehensive quality control ensures libraries meet Illumina specifications and maintain biological fidelity.

  • RNA/DNA integrity via BioAnalyzer or TapeStation
  • Concentration via Qubit fluorometry
  • Fragment analysis and adapter content assessment
  • Library molarity and index confirmation before pooling

Analysis integration

Libraries can be sequenced and analyzed within GTAC@MGI pipelines for seamless delivery from prep to discovery.

  • Sequencing-ready, dual-indexed libraries (10 bp indices)
  • Compatible with NovaSeq X Plus and other Illumina systems
  • Standard RNA-Seq and DNA-Seq analysis pipelines available
  • Differential expression, variant calling, methylation, and pathway analysis

Deliverables

  • Indexed, pooled, and QC-verified Illumina libraries
  • BioAnalyzer / TapeStation / Qubit reports
  • Optional FASTQ output if sequenced at GTAC@MGI
  • Sample metadata, kit details, and pooling strategy
  • Optional downstream analysis results

Contact us for guidance on input requirements, QC thresholds, and recommended sequencing depth.

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